SeqMINER | Tool name | SeqMINER |
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| URL | http://bips.u-strasbg.fr/seqminer/tiki-index.php |
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| Important features | 1. It is used to interpret data.
2. It does qualitative and quantitative analysis of reference and ChIP seq data.
3. First it collects the data, then clusters it and finally visualizes the data. |
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| Citations | Ye T, Krebs AR, Choukrallah MA, Keime C, Plewniak F, Davidson I, Tora L. seqMINER: an integrated ChIP-seq data interpretation platform. Nucleic Acids Res.
2011 Mar;39(6):e35. Epub 2010 Dec 21. PubMed PMID: 21177645; PubMed Central
PMCID: PMC3064796. |
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| Year of publication | 2011 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | ChIP seq analysis |
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| Category | Free, Downloadable |
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| License | GPL3 |
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| Status | |
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| Input file format | BED, SAM, BAM |
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| Output file format | BED, png |
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| Operating system | Platform independent |
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| Operating language | Java |
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| Platform | High throughput sequencing data |
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| Maintained by | Tao Ye, Arnaud Krebs, IGBMC (Strasbourg)
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| Downloadable file format | |
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